You can follow my NGS tools from docker hub keyword skysbiodocker.
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- Gökalp Çelik
You need to check with your capture kit manufacturers support files for the proper bed file. (View Post)
Looks like you have a very low number of ROIs in your dataset. Increasing sensitivity in expense of false calls looks like your only option and you may eliminate false calls by looking at the frequen… (View Post)
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When you use a bed file for these tools to jump from region to region HTSJDK requires a proper index to handle the lookup tables from the vcf index. A proper vcf index for jumping regions also requir… (View Post)