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ysgz7

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ysgz7
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  • > @cnorman said: > @ysgz7 You're running GATK v4.1.2.0, but referencing the GATK v3.8.0 documentation. If you want to use a filename with SelectVariants -sn in v4.1.2.0, the filename needs to end with a .args suffix. See this for more detail…
  • It doesn't work either. As my understanding, followed by -sn should be the name(s), but I'm using a txt file with about 100 names. Am I right? I was reading the table here software.broadinstitute.org/gatk/documentation/tooldocs/3.8-0/org_broadins…
  • GATK version: 4.1.2.0 my command: ./gatk SelectVariants -V myfile.vcf.gz -O myoutput.vcf -RF -sf my.sample.names.txt *********************************************************************** A USER ERROR has occurred: Invalid argument 'my.sa…