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Nevermind, link at the top of the page DOES work, I'll try with this script...
Hi GATK! Would it be possible for you to post an updated link to the BQSR.R script? The link above is no longer working. I spent awhile poking around GitHub looking for it, but seemed to just be going in circles. Best wishes!
Thanks for the info! Just to better my understanding, how would more extensive trimming influence the BQSR process? For example, our lab typically trims poor quality bases (less than Phred-20) from the 5' and 3' ends of Illumina reads (and sometim…