ocampoernesto

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ocampoernesto
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  • I know it's been quite a while but if it's useful for future readers, I think now you can do: echo "${true='--covar ' false='' defined(covariates)}${sep=' --covar ' covariates}" so you don't need an auxiliary input variable.
  • Hi @Ruchi thanks for the reply. I'd seen the monitoring script before, I think it's good for monitoring the task's resource usage as it runs. However, I'm more after something that will give me the totals after a task has finished, like total CPU t…
  • Thank you that's very useful! Regarding the mysql database, will invalid rows get deleted, or just get marked as invalid? I worry that the database may grow indefinitely, especially if we run thousands of tasks per day.
  • Hi @danb, The submit option worked as expected, and after some more trial and error, I managed to get the imports working via REST post as well. importing.cwl: cwlVersion: v1.0class: Workflowinputs: []outputs: []steps: imp: run: imported.cwl …
  • Hi @danb thanks for the reply. I haven't tried using run as that's not really an option in the system we are building - we aim to use Cromwell as our workflow scheduling server. I look forward to CWL support in server mode, thank you.