ltonon

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ltonon
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Laurie Tonon

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  • Thanks I understand a bit better. But this leads to another question. I ran ContEst on my data and the average contamination given was 1.5. How can I have mutations rejected by MuTect if its cross-patient contamination level by default is 2%? Can …
  • I would really need an explanation about the extended output columns. Especially about the biais and filters. Does someone managed to have one?
  • Hi, I did what you suggested and it worked well. The different chunks run with a single thread and it takes between 1 and 2 hours for muTect to process them. So I think the problem is with the mutlithreading right? I also noticed that the walker sp…