- Last Active
Thanks for following up. I realized that I was using different blacklist intervals from the resource bundle.
I'm running into a similar issue at the DenoiseReadCounts step with cnv_somatic_pair_workflow: 22:50:58.635 INFO SVDDenoisingUtils - Validating sample intervals against original intervals used to build panel of normals... 22:50:59.487 INFO Den…
Hi @shlee, I'm currently trying to use Firecloud to run the cnv_somatic_panel_workflow.wdl and cnv_somatic_pair_workflow.wdl available here: https://github.com/gatk-workflows/gatk4-somatic-cnvs/blob/master/cnv_somatic_panel_workflow.wdl Looks lik…
The google bucket is an external one (not the auto created one when I made the workspace). I initially wanted to use the auto created bucket, but I wasn't able to upload my files with gsutil cp (which was actually an issue with the specific pytho…
Was recommended to change the proxy group permissions to "storage object viewer", "storage legacy bucket reader", and "storage legacy bucket owner" and it looks like the workflow completed successfully! I don't clearly understand the roles that c…
I am running into the same error: I have a workspace fccredits-radium-magenta-9081/witte-cfdna that was created on December 14, 2018 under the FireCloud Billing project fccredits-radium-magenta-9081 (free credits), and I'm trying to run my workf…