- Broad Institute
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- Member, Broadie, Moderator
Not able to upload my error files to the Broad ftp site.
I just have a short txt file and a validation fileFebruary 2
Is there a way to run HaplotypeCaller for multiple reads in a bam file. When i run the HaplotypeCaller the output vcf provides the SNV hits but with no read ID. I am not able to figure out which SNV corresponds to which read of the bam file.January 26