We’re moving the GATK website, docs and forum to a new platform. Read the full story and breakdown of key changes on this blog.
This section of the forum is now closed; we are working on a new support model for WDL that we will share here shortly. For Cromwell-specific issues, see the Cromwell docs and post questions on Github.
Forcing cromwell to submit all possible jobs at once
When I use cromwell to submit jobs on LSF and on AWS (SGE) I often see cromwell submitting only a fraction of the available jobs to submit. So if I have a 1000 jobs often times there's only 100 jobs pending at the same time. Not only does this behavior waste time it also gives problem on AWS, where the # of queueing jobs is used to determine scaling behavior. Is there a way to force Cromwell to submit as many jobs as possible into the job scheduler?