To celebrate the release of GATK 4.0, we are giving away free credits for running the GATK4 Best Practices pipelines in FireCloud, our secure online analysis portal. It’s first come first serve, so sign up now to claim your free credits worth $250. Sponsored by Google Cloud. Learn more at https://software.broadinstitute.org/firecloud/documentation/freecredits

Comment WDL lines with Ctrl+/ in Sublime Text

myourshawmyourshaw University of ColoradoMember

There is a nice WDL syntax highlighter for Sublime Text described on the WDL web site. However, the highlighter does not provide a shortcut for commenting out a line or block of lines. I found that this works well to implement a commenter using the Ctrl+/ keys.
Create the file $HOME/.config/sublime-text-3/Packages/wdl.tmPreferences with the following contents:

<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE plist PUBLIC "-//Apple Computer//DTD PLIST 1.0//EN" "http://www.apple.com/DTDs/PropertyList-1.0.dtd">
<plist version="1.0">
<dict>
   <key>name</key>
   <string>WDL Comment</string>
   <key>scope</key>
   <string>source.wdl</string>
   <key>settings</key>
   <dict>
      <key>shellVariables</key>
      <array>
         <dict>
            <key>name</key>
            <string>TM_COMMENT_START</string>
            <key>value</key>
            <string># </string>
         </dict>
      </array>
   </dict>
   <key>uuid</key>
   <string>31509f93-e4f4-4a88-8fc6-82ff082e849d</string>
</dict>
</plist>

Don't worry about the reference to Apple Computer; this works fine on a Red Hat box.

Tagged:

Best Answer

Answers

Sign In or Register to comment.