This section of the forum is now closed; we are working on a new support model for WDL that we will share here shortly. For Cromwell-specific issues, see the Cromwell docs and post questions on Github.
Remove intermediary files of workflow to prevent storage flood
In a typical SNV/INDEL identification workflow, fastq files are serially converted to bam, sorted-bam, marked-duplicates.bam, base-quals-recalibrated.bam which floods my limited storage space, especially when I process many samples. What is the best practice to remove intermediary big files? Add a rm inputBam at the end of the command-block of a task-block?