We’re moving the GATK website, docs and forum to a new platform. Read the full story and breakdown of key changes on this blog.
This section of the forum is now closed; we are working on a new support model for WDL that we will share here shortly. For Cromwell-specific issues, see the Cromwell docs and post questions on Github.
LSF support in Cromwell
We would like to configure Cromwell to work with LSF. Initially I was not even sure the support for LSF is still there in the recent versions of Cromwell but was told that it is but it is merged with other backends.
How does one go about configuring LSF support? Is there a template for defining LSF backend?
To be honest, even the description of the SGE backend here
is not very clear to me. It is too fragmented. If someone can share a simple full working example for SGE that would be a good start. Then perhaps it can be adapted to LSF.