This section of the forum is now closed; we are working on a new support model for WDL that we will share here shortly. For Cromwell-specific issues, see the Cromwell docs and post questions on Github.
Is there something comparable to scatterCount in Queue?
I'd like to run gatk tools with data parallelism. Looking at tutorial, I am not sure if it comes with data parallelism for one sample.
I wonder if it is possible to split data into multiple pieces in wdl/cromwell by setting a number as Queue script splitting data using the scatterCount.
Would I need to implement a function getting genomic intervals from the count to do that? Thanks!