We’re moving the GATK website, docs and forum to a new platform. Read the full story and breakdown of key changes on this blog.
This section of the forum is now closed; we are working on a new support model for WDL that we will share here shortly. For Cromwell-specific issues, see the Cromwell docs and post questions on Github.
image ENTRYPOINT requirement
I have seen instances of where trying to run a command in an image
where the ENTRYPOINT is NOT /bin/bash leads to problems.
According to https://github.com/broadinstitute/cromwell#local-backend it says
The subprocess command that the local backend will launch is: "/bin/bash" "-c" "cat script | <docker_run> /bin/bash <&0"
From my understanding this implies that running cromwell with a local backend
requires that the ENTRYPOINT of the image be /bin/bash. Is that correct??? If not, what are
the requirements for the ENTRYPOINT of the image???