Heads up:
We’re moving the GATK website, docs and forum to a new platform. Read the full story and breakdown of key changes on this blog.
Update: July 26, 2019
This section of the forum is now closed; we are working on a new support model for WDL that we will share here shortly. For Cromwell-specific issues, see the Cromwell docs and post questions on Github.

can cromwell localize gs:// links during testing (direct cromwell execution) with input.json?

bhaasbhaas Broad InstituteMember, Broadie


I'm trying to run cromwell locally for testing before putting everything into firecloud. When running cromwell on the command line with an input.json file, it doesn't appear to be able to automatically retrieve the gs:// entries in the input. I'm not interested in saving my results back to the cloud right now. Is it easy to just have the inputs read from gs:// and run/store everything locally?

Sign In or Register to comment.