Heads up:
We’re moving the GATK website, docs and forum to a new platform. Read the full story and breakdown of key changes on this blog.
Update: July 26, 2019
This section of the forum is now closed; we are working on a new support model for WDL that we will share here shortly. For Cromwell-specific issues, see the Cromwell docs and post questions on Github.

Scatter:Gather by array indices

ericco92ericco92 Cambridge, UKMember ✭✭

I have multiple use cases where I'd like to iterate over the indices of multiple same-size arrays (e.g. when aligning paired fastq files or slices of tumor / normal BAMs). Is this something that's supported by Cromwell / FireCloud? I can't seem to find anything regarding it in the docs.

Best Answer


  • ericco92ericco92 Cambridge, UKMember ✭✭

    Thanks @ChrisL ! I didn't realize WDL had range/zip functions. Just to be sure - are they FireCloud compatible?

  • ChrisLChrisL Cambridge, MAMember, Broadie, Dev admin

    Yes- those functions should all be fully functioning in Firecloud!

Sign In or Register to comment.