Update: July 26, 2019
This section of the forum is now closed; we are working on a new support model for WDL that we will share here shortly. For Cromwell-specific issues, see the Cromwell docs and post questions on Github.

Scatter:Gather by array indices

ericco92ericco92 Cambridge, UKMember ✭✭

I have multiple use cases where I'd like to iterate over the indices of multiple same-size arrays (e.g. when aligning paired fastq files or slices of tumor / normal BAMs). Is this something that's supported by Cromwell / FireCloud? I can't seem to find anything regarding it in the docs.

Best Answer


  • ericco92ericco92 Cambridge, UKMember ✭✭

    Thanks @ChrisL ! I didn't realize WDL had range/zip functions. Just to be sure - are they FireCloud compatible?

  • ChrisLChrisL Cambridge, MAMember, Broadie, Moderator, Dev admin

    Yes- those functions should all be fully functioning in Firecloud!

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