This section of the forum is now closed; we are working on a new support model for WDL that we will share here shortly. For Cromwell-specific issues, see the Cromwell docs and post questions on Github.
difference between five-dollar-genome-analysis-pipeline and broad-prod-wgs-germline-snps-indels
We have been testing broad-prod-wgs-germline-snps-indels for functional equivalence alignment/BQSR in the cloud. I am wondering, what is the difference between the pipeline(s) in that repository and those published under five-dollar-genome-analysis-pipeline. The descriptions are similar, is the "five dollar" version more optimized somehow?