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difference between five-dollar-genome-analysis-pipeline and broad-prod-wgs-germline-snps-indels

We have been testing broad-prod-wgs-germline-snps-indels for functional equivalence alignment/BQSR in the cloud. I am wondering, what is the difference between the pipeline(s) in that repository and those published under five-dollar-genome-analysis-pipeline. The descriptions are similar, is the "five dollar" version more optimized somehow?




  • RuchiRuchi Member, Broadie, Moderator, Dev admin

    Hey @joe_whitney

    There was a point in time where the two pipelines were slightly different and the five-dollar pipeline was more optimized for cost, but at as of right now the broad-prod-wgs-germline seems to have incorporated the cost optimizations so they are about the same.


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