Can inputs be specified on the command line?

edpark_clearlabs

Is there a way to specify the the values for some input variables to Cromwell on the command line rather than having to use an input JSON file?

For example, something like:

--inputs myconfig.flag=foobar

danb

To be more precise, no there is not a way to provide an input value via the command line run command, although that does seem like a reasonable request. I created this issue in github to track it.

https://github.com/broadinstitute/cromwell/issues/3406

danb

If you want to hardcode it, yes, just include it in your command. If not hardcoded, ultimately your input will have to be provided via the input JSON file.

danb

To be more precise, no there is not a way to provide an input value via the command line run command, although that does seem like a reasonable request. I created this issue in github to track it.

https://github.com/broadinstitute/cromwell/issues/3406