Forum Login Issue:
Currently the "Log in with Google" button redirects you to a "Page not found." Our forum vendors have implemented a fix, and now we are just waiting on a patch to be released. In the meantime, while on the "Page not found" you can edit the URL to delete the second gatk, firecloud, or wdl (depending on what subforum you are acessing).
ex: https://gatkforums.broadinstitute.org/gatk/gatk/entry/...
Currently the "Log in with Google" button redirects you to a "Page not found." Our forum vendors have implemented a fix, and now we are just waiting on a patch to be released. In the meantime, while on the "Page not found" you can edit the URL to delete the second gatk, firecloud, or wdl (depending on what subforum you are acessing).
ex: https://gatkforums.broadinstitute.org/gatk/gatk/entry/...
Can inputs be specified on the command line?
edpark_clearlabs
Member
Is there a way to specify the the values for some input variables to Cromwell on the command line rather than having to use an input JSON file?
For example, something like:
--inputs myconfig.flag=foobar
Best Answer
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danb
Member, Broadie
To be more precise, no there is not a way to provide an input value via the command line
runcommand, although that does seem like a reasonable request. I created this issue in github to track it.
Answers
If you want to hardcode it, yes, just include it in your
command. If not hardcoded, ultimately your input will have to be provided via the input JSON file.To be more precise, no there is not a way to provide an input value via the command line
runcommand, although that does seem like a reasonable request. I created this issue in github to track it.https://github.com/broadinstitute/cromwell/issues/3406