Forum Login Issue:
Currently the "Log in with Google" button redirects you to a "Page not found." This is an issue that our forum vendors are working on fixing. In the meantime, while on the "Page not found" you can edit the URL to delete the second gatk, firecloud, or wdl (depending on what subforum you are acessing).
ex: https://gatkforums.broadinstitute.org/gatk/gatk/entry/...
Currently the "Log in with Google" button redirects you to a "Page not found." This is an issue that our forum vendors are working on fixing. In the meantime, while on the "Page not found" you can edit the URL to delete the second gatk, firecloud, or wdl (depending on what subforum you are acessing).
ex: https://gatkforums.broadinstitute.org/gatk/gatk/entry/...
Test for job failure
jmichael
Member
I wrote an LSF backend and my WDL task is using more memory than I requested from LSF (from within a task) and so LSF kills the job. The problem is that the 'job' is the 'script' written by cromwell and the 'rc' file cannot be written since LSF kills the job.
In this case cromwell cannot detect job failure and so hangs forever. How do I integrate LSF such that cromwell can detect job failure? If LSF submits the script and the 'rc' file is only written from within the script then it can never be written if LSF kills the job.
Tagged:
Answers
Hi @jmichael,
The issue you're running into is being tracked here: https://github.com/broadinstitute/cromwell/issues/1499
Please follow and contribute to the discussion there if you'd like.
Thanks