To celebrate the release of GATK 4.0, we are giving away free credits for running the GATK4 Best Practices pipelines in FireCloud, our secure online analysis portal. It’s first come first serve, so sign up now to claim your free credits worth $250. Sponsored by Google Cloud. Learn more at https://software.broadinstitute.org/firecloud/documentation/freecredits

Split and collect files?

Is there any functionality in place that supports this? For example, chunking a file and scattering each chunk for processing, and collecting and concatenating the results? I'm surprised because I figured this was a common use case. Even suppose I have my own core modules that perform the mechanics of this, but I still don't see an easy way to write out a series of split files to a list, for later scattering.

input split > [input_a, input_b, input_c, ...] > scatter > process > collect

Am I doing it wrong?

Thanks!

Tagged:

Best Answer

Answers

Sign In or Register to comment.