We’re moving the GATK website, docs and forum to a new platform. Read the full story and breakdown of key changes on this blog.
This section of the forum is now closed; we are working on a new support model for WDL that we will share here shortly. For Cromwell-specific issues, see the Cromwell docs and post questions on Github.
submit workflows.wdl on SGE for tutorials
I'm trying to run workflows on SGE, java -Dconfig.file=./reference.conf -jar ./cromwell-28_2.jar run ./workflow.wdl ./pipeline_.json .
But it's still not working to submit job by SGE. I would like to know how to make sure my setting main.wdl is correct. Do you have any examples such as tutorials to share us, https://github.com/broadinstitute/wdl/tree/develop/scripts/tutorials/wdl ?
Many Thanks, Hannah