This section of the forum is now closed; we are working on a new support model for WDL that we will share here shortly. For Cromwell-specific issues, see the Cromwell docs and post questions on Github.
Reduce verbosity of cromwell run
Is there a way to reduce the verbosity of
cromwell run? It prints a lot of information, in very long lines, which makes it difficult to see where exactly things went wrong if a workflow fails. I noticed that the logs in
cromwell-workflow-logs are a lot cleaner, and tend to only print out the more relevant information, like
[UUID(f01048ab)]: Starting calls: variantDiscovery.genotype:6:1, or
java.lang.Exception when something goes wrong.
Is there a way to disable the additional output that
cromwell run generates? I had a look at the settings file for cromwell but nothing seemed relevant to this issue.
Edit: It looks like this got placed in the gatk forum by mistake, feel free to move it to the wdl forum.