To celebrate the release of GATK 4.0, we are giving away free credits for running the GATK4 Best Practices pipelines in FireCloud, our secure online analysis portal. It’s first come first serve, so sign up now to claim your free credits worth $250. Sponsored by Google Cloud. Learn more at https://software.broadinstitute.org/firecloud/documentation/freecredits

[WDL] Disabling preemptible.

Hi,

I would like to disable preemptible under runtime in the WDL script.

I have set up a WDL pipeline to process my FASTQ all the way through to HaplotypeCaller. Typically, I have preemptible set to 3 tries, but for HaplotypeCaller, I find this to be problematic. I would like to not allow preemptible. I could not find anything in the forums or documentation that explicitly spells out how to do this. I tried preemptible: false, but that ended up erroring out the gcloud genomics pipeline.

Would simply leaving out preemptible in the runtime section default to a non-preemptible runtime?

-- Derrick DeConti

Answers

Sign In or Register to comment.