Update: December 4, 2019
We have migrated all WDL documentation to our new support center platform. You can find that documentation here, where it now lives alongside documentation for Terra. In the next few days, this site will begin to redirect you there. If you have any questions or can't find documentation, you can reach out to our support team on the new forum.
We have migrated all WDL documentation to our new support center platform. You can find that documentation here, where it now lives alongside documentation for Terra. In the next few days, this site will begin to redirect you there. If you have any questions or can't find documentation, you can reach out to our support team on the new forum.
Heads up:
We’re moving the GATK website, docs and forum to a new platform. Read the full story and breakdown of key changes on this blog.
We’re moving the GATK website, docs and forum to a new platform. Read the full story and breakdown of key changes on this blog.
Update: July 26, 2019
This section of the forum is now closed; we are working on a new support model for WDL that we will share here shortly. For Cromwell-specific issues, see the Cromwell docs and post questions on Github.
This section of the forum is now closed; we are working on a new support model for WDL that we will share here shortly. For Cromwell-specific issues, see the Cromwell docs and post questions on Github.
Cromwell + WDL
Cromwell workflow management system and Workflow Description Language support forum. For more information about WDL, see the WDL User Guide section. For more information about Cromwell, see the Cromwell Docs section. Cromwell also supports CWL; for CWL documentation and support, see https://www.commonwl.org/user_guide.
Category List
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Expand for more options.Ask a question or report a problem you encountered while using Cromwell and/or WDL.
598 discussions
1.9K comments
Most recent: Differences between running wdl scripts with wdl-runner versus java -jar cromwell.jar by samesense
December 12
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Expand for more options.Documentation for the Workflow Description Language. For a gentle introduction on how to write WDL workflows, see the WDL Quickstart Guide.
46 discussions
80 comments
Most recent: [1] (howto) Write your first WDL script running GATK HaplotypeCaller by wilfredc
July 9
Child Categories: Tutorials, Real Workflows, Frequently Asked Questions, Solutions to Problems, Components, Plumbing Options, Archive