Hi @anapaulamachado, To convert the p-value back from phred-scale you'd use this formula:
P=10^(-Q/10)
So your value of 0 plugged into that formula is:
P = 10^(0/10) = 10^0 = 1
The value … (View Post)

@Ruchi I haven't noticed this error very often, so it's not a high priority to me. Just wanted to note it on the forum in case others had seen it. Thanks so much for your response! (View Post)

Hi @wenluo,
Using the C->T example you gave above, each of the metrics in question are summing over a particular number of times there's a base in the read (C in the PRO_REF_BASES and CON_REF_B… (View Post)

Hi Joane,
ExcessHet is actually a phred-scaled P-value. So when you see a value of 0, that's actually a phred-scaled value. That means 10^0 = 1, this site actually has a p-value of 1, which is exa… (View Post)