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Mentioning someone in a discussion (like this: @Name) is a great way to encourage dialog and let them know who you’re talking to.February 15
I have a problem in the HaplotypeCaller Step for Whole Genome Sequencing Data. after run this step i getting the following error massage (In the attached image).Due to two errors created (in the image), the run step begins and remains in this position for more than two days without having an output? any idea what this might be?
Code i run:
java –Xmx64g -jar /home/m.rafiepour222/GenomeAnalysisTK-3.8-0-ge9d806836/GenomeAnalysisTK.jar –R /home/m.rafiepour222/GCF_000298355.1_BosGru_v2.0_genomic.fa -T HaplotypeCaller -I /home/m.rafiepour222/SRR3112417/SRR3112417.sort.rmdup.bam -o /home/m.rafiepour222/SRR3112417/SRR3112417.raw.snps.indels.g.vcf