ziva

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ziva
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Sweden
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  • Thank you @thibault for your answer! It works and I need to use the commandline "genotyper.sample_ploidy = qscript.sample_ploidy" in the def script(){...} as well. And thank you for pointing me to the thread that answered my other questio…
  • @Geraldine_VdAuwera About the job schedular, the server I work on has a system called "The Slurm Workload Manager". Is this a type of job schedular that scatter-gather requires? I tried different values to the two arguments "this.me…
  • Hi, Thank you both for your reply! @thibault I tried your way. The script runs smoothly, but still the output is based on sample_ploidy=2. As you suggested, I added the line "import org.broadinstitute.gatk.utils.commandline.ClassType" as …