Heads up:
We’re moving the GATK website, docs and forum to a new platform. Read the full story and breakdown of key changes on this blog.

wangj27

About

Username
wangj27
Location
new york city
Joined
Visits
2
Last Active
Roles
Member
Points
7
Badges
2
Location
new york city

Comments

  • input fastq which is generated from Nimblegene. Then run through GATK get the .vcf.
  • java -jar GenomeAnalysisTK.jar -R Homo_sapiens_assembly19.fasta -T GenotypeConcordance -gfe --ignoreFilters -eval 1305446.combined.vcf -comp s1305446EX.combined.vcf -o aa.txt
  • java -jar GenomeAnalysisTK.jar -R Homo_sapiens_assembly19.fasta -T GenotypeConcordance -gfe --ignoreFilters -eval 1305446.combined.vcf -comp s1305446EX.combined.vcf -o aa.txt