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vasya

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vasya
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Vasily Trubetskoy

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  • Thanks for your help Geraldine. The recalibration worked perfectly with the file that you specified.
  • I have tried a couple of modified versions of the reference: * Removing the FORMAT fields from the header. * Removing all but at GT FORMAT field from the header, and adding a GT FORMAT column. Unfortunately, both of these produced the same error. …
  • Thanks for the quick reply Geraldine! I misunderstood what data were being used to train the model. And yes, I am having trouble with the VQSR of indels. GATK throws the following error: (Quote) The Mills reference is missing a FORMAT column. The…