sksinghal

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sksinghal
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  • Hi Sheila, I'll try your suggestion and get back to you. Thanks Sandeep
  • Hi Sheila, Although this question may has been asked, if you do not mind asking it again, as I am looking for some workflows, strategies, ideas for filter and annotate of MUTECT2 generated vcf files. Please provide me some tutorial or directions. …
  • Hi Sheila, Thanks again for your help. I used the FilterMutechCalls with just a merged vcf files but my output file is empty. java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_trib…
  • Hello Sheila, Thanks for your response and help. My error is still unsolved. As per your suggestion, I have run the input VCF with ValidateVariants and following output shows the there is no problem with the vcf file. To regenerate the VCF index,…
  • Hi, Thanks. hamper error has been removed but I am getting similar error with other resources i.e. 12.0 1000G_omni2.5.b37.vc, 10.0 1000G_phase1.snps.high_confidence.b37.vcf, 2.0 dbsnp_135.b37.vcf If I am using the following commend: --resource omni…