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- Full Name
- Lee SangJin
Hello @bhanuGandham, I was wondering if the ReadBackedPhasing implemented within HaplotypeCaller and MuTect2 has been updated such that it will also haplotype phase germline indels and somatic indels. The documentation from the past (https://gatkf…
Hello @bhanuGandham, I will be using the latest GATK to call the germline and somatic variants. Does the MuTect2 haplotype phasing also take into account parental germline variants? Thank you!
To whom it may concern, I wanted to ask one question regarding calculating the population prior. In the article https://www.broadinstitute.org/gatk/guide/article?id=4727, it is recommended to use the phase 3 dataset from thousand genomes for calcu…