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Thanks @shlee I will try out the suggestions made by you. Lets see if what can make this work
@Geraldine_VdAuwera said: Ah yes try not choking your computer to death with impossible demands Also you should not use UnifiedGenotyper anymore, that thing is a fossil. As posted originally my command was : nohup java -jar /dum…
@shubhra said: System specification The version of my JAVA is: 1.7.0_79 The version of my GATK is: 3.7.0 My OS is: Ubuntu 14.04.2 LTS My processor is: Intel Core i5-4440 CPU @ 3.10GHz × 4 I have been successful in creating a …
@SkyWarrior said: It seems that there is something inherently wrong going on here. Unified Genotyper is usually very fast and it should not take more than a few hours even with the largest files. All most all the utilities are slow not ju…
@SkyWarrior said: upgrade to Java 1.8 I guess that is the biggest issue. Even with Java 1.8 it is slow.
I was having a "ERROR StatusLogger Log4j2 could not find a logging implementation" error and I tried to rectify it with the nighly build but with no avail The version of nightly build is : GenomeAnalysisTK-nightly-2017-12-11-1 The version of jav…