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seungminkim

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seungminkim
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  • Hi @EADG I'm using Hg38 GATK reference Homo_sapiens_assembly38.fasta I used bowtie-build & tophat for ERR187525.fastq and used picard tools for the bam file. My GATK version is 3.8.0. My command was java -jar GenomeAnalysisTK.jar -T RealignerT…