preetisingh

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preetisingh
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  • Hi, Apologies for the constant texts. I have been able to list the files but my terminal (on Mac) still doesn't recognise GATK commands. With any GATK command I get the following error -bash: gatk: command not found I am unable to create a refere…
  • Also, the script and jar files have been extracted into the same folder (every time) and still I get the same error. Thanks. Preeti
  • Hi, I have java 1.8 and i still get this error GATK jar /Users/preetisingh/Documents/gatk-4.0.1.1/gatk-package-4.0.1.1-local.jar Running: java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_asyn…