npriedig

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npriedig
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  • Hello @Geraldine_VdAuwera, thank you for getting back regarding my issue! What you wrote makes perfect sense and is very clear. I will look very carefully at the MAPQ values to see if I can improve the results.
  • Hello, I performed this pipeline and the results in the vcf generally match what I'm seeing in the STAR-aligned RNA-seq .bam file via IGV, which is fantastic. The STAR alignment produced a relatively high mapping rate (>80%). However, I'm noti…