lakshmanteja

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lakshmanteja
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  • Hello, You can try the below GATK command to filter variants by 'PASS': gatk --java-options "-Xmx20G -XX:+UseParallelGC -XX:ParallelGCThreads=8" SelectVariants -R reference.fasta -V snps.vcf.gz --exclude-filtered true -O filter.vcf.gz A…