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jparker4

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jparker4
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  • My GATK version is: v4.0.11.0, I'm not running it on the firecloud/NFS system, but as part of a custom build variant calling pipeline. The entire error log is (I have pared down the full list of files submitted in the interest of readability): …
  • Hi GATK team, I posted here last Friday but my post seems to have disappeared. I am having a problem when running GenomicsDBImport on a set of gVCF files. The error in question is: A USER ERROR has occurred: Failed to create reader from file:///m…
  • Hi, I'm having a problem with GenomicsDBImport that I have no idea how to solve. The error in question is: A USER ERROR has occurred: Failed to create reader from file:///mnt/fastdata/mbp15jdp/GTEx/SRA-private/SCAPT_gVCF/Variantcalls.dir/Frontal_Cor…