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johnsonko

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johnsonko
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  • Hello, Can the Path-Seq tool accept uBAM from DNA-Seq without issue? Or, only RNA-Seq? How might I be able to retrofit the tool for use with a uBAM from DNA-Seq if cannot readily accept? Thanks ... best, Kory
  • Just to follow-up on my previous post, I took the output.bam, sorted and indexed using bamtools, then generated a header using bamtools. I then used VI to locate the reference length reported in the output.txt file for a microbe of interest in the …
  • Hello, can you please provide suggested instructions on how to subset the output .bam file to get the mapped reads for a microbe that is reported in the output .txt file. It would seem I could use bamtools split command or samtools view command to s…