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- Full Name
- KJ Lim
@shlee said: Hi @jinkeanlim, Can you please post the command that produced the error? Thanks. Dear @shlee The problem was solved. It was due to server restriction instead of potential bug of Picard tools. Thanks for your time.
I have encountered with an error (below) when using the MarkDuplicates. No results were produced. /appl/bio/picard/picard-2.6.0/bin/picard: line 5: 27651 Killed /usr/lib/jvm/java-1.8.0-oracle.x86_64/bin/java -Xmx32g -jar /appl/bio…
I forgot to include the command I used and Java version in my post. The MarkDuplicates command: picard.sam.markduplicates.MarkDuplicates INPUT=SW.sorted.bam \ OUTPUT=SW.ptSrtNoDup.bam METRICS_FILE=SW.ptMetrics.txt \ REMOVE_DUPLICATES=tru…