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(Quote) as in my test, using 1 thread and 6 threads has no big different...
(Quote) That's worth trying，thanks a lot
(Quote) This variant was successfully called while we removed the "--dontUseSoftClippedBases" option, which means enlarge the active region in assemble step ??
(Quote) this variant was found in another repeat sample (bio-repeat) using the same parameter in HC
Hi, my question is pretty simple, I have a batch of sites (may be multiple allele in one site), I would like to genotype all this sites, output all alleles' depth and genotype quality and genotypes. Which tools can do this in GATK? As I know, HC may…
@shlee @Sheila I found if we combine two variants into one line (multiple allele), GATK can output this three genotype results, but another question is the GQ of this variants is 0. 9 34648361 rs111033738 GC AC,G 0 LowQual AC=0,0;AF=0.00…
@Sheila ,@Geraldine_VdAuwera Any suggestions?