jalves

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jalves
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  • @Geraldine_VdAuwera said: (Quote) Hi Geraldine. Are you sure that Markduplicates consideres both ends for the detection of duplicates? According to the Picard Wiki page it only appears to take into account the 5' coordinate of the reads: "Ess…
  • Thanks a lot for the help and comments @Geraldine_VdAuwera and @JCGrenier, it was very useful. It is probably not as relevant now, but I am using version 3.3.0 and indeed the lack of the QD field only happens for some of the variants.
  • Hi @Geraldine_VdAuwera and @JCGrenier , Is there any update about this? I am having exactly the same issue. I am trying to use the tool "VariantsToTable" to export the several fields including QD field and it gives me the error below. The…
  • Hi, This is indeed a very useful thread. However, I am still a bit confused regarding what is the best way to proceed in terms of the read group ID assignment for different samples sequenced in the same lane. I have 6 lanes of data. In each lane, …