ianc

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ianc
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  • Yup that fixed that problem, thanks for the help
  • I should mention I'm running this on a non-human, haploid genome also
  • Hi, I'm getting an error when running SVDiscover with this command java -Xmx8g -cp ${SV_DIR}/lib/gatk/Queue.jar:${SV_DIR}/lib/SVToolkit.jar:${SV_DIR}/lib/gatk/GenomeAnalysisTK.jar \ org.broadinstitute.sting.queue.QCommandLine \ -S /${GENOMESTRIP_PA…