- Last Active
- Member, Broadie
- Full Name
- Devin McCabe
So, the problem is actually Broad's .google-cloud-sdk dotkit. I installed the latest version (171.0.0) on the VM and everything works. It would be good to specify a minimum version number in the GATK readme and maybe check in the launcher, too.
After following the instructions above I'm getting the below error. It's strange because I could've sworn this worked a few months ago. oncotator --helpTraceback (most recent call last): File "/xchip/tcga/Tools/oncotator/onco_env/ubin/oncotat…