dmccabe

About

Username
dmccabe
Location
Boston
Joined
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Last Active
Roles
Member, Broadie
Points
20
Badges
3
Location
Boston
Full Name
Devin McCabe

Comments

  • (Quote) I'm having a hard time finding info about Broad-recommended interval lists as mentioned here. Is there supposed to be a link?
  • So, the problem is actually Broad's .google-cloud-sdk dotkit. I installed the latest version (171.0.0) on the VM and everything works. It would be good to specify a minimum version number in the GATK readme and maybe check in the launcher, too.
  • After following the instructions above I'm getting the below error. It's strange because I could've sworn this worked a few months ago. oncotator --helpTraceback (most recent call last): File "/xchip/tcga/Tools/oncotator/onco_env/ubin/oncotat…