- Cambridge, MA
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- Member, Broadie
Thanks! That actually fixed the problem.
Edit: After looking through the forum, I found that the problem is possibly that I have insufficient indels. Though these are WES human samples, I do have 54 of them, so I would be surprised that this is the problem...
Hi, I'm trying to determine the definition of "covered base" -- I see here that the default is 8 reads in the normal and 14 reads in the tumor. Is there a minReadQuality filter for a valid read when counting the number of bases? Or does the noti…