ashbig

About

Username
ashbig
Location
philadelphia
Joined
Visits
46
Last Active
Roles
Member
Points
18
Badges
4
Location
philadelphia

Comments

  • Sorry I did not see responses sooner! @bhanuGandham I actually am using GATK 4.1 in this case the calculated AF by depth was about .9% and the probabilistic method called it at about 2%. It is an incredibly low level variant, so I wasn't expecting …
  • hi @davidben, Could you point me to a resource that describes this behavior in depth? I just came across a situation where a known cancer driving mutation (in a reference standard) was called at the correct AF by the probabilistic method, despite A…