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Will probably be after the holidays, but I'll keep you posted
Attached is the vcf header with two of the lines for an example so you can see what I'm talking about. I've removed all sample information and genotypes.
I have a question about best practices when reverting BAMs to fastq. If I'm going to completely re-analyze (mapping all the way to calling variants) the reverted fastq and there are multiple read-groups in the BAM, is it best to create a fastq for …
(Quote) Hi Geraldine, Thanks. With the newer version of htslib you can just recompile samtools with the new htslib library and all the functionality is available from samtools.
Hi, The most current branch of htslib is the develop branch. Is there a reason to install the master branch that looks like it has been stopped being developed and merged into the develop branch? Thanks, Aaron