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We’re moving the GATK website, docs and forum to a new platform. Read the full story and breakdown of key changes on this blog.
We’re moving the GATK website, docs and forum to a new platform. Read the full story and breakdown of key changes on this blog.
UmerMaqsood10 ✭
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- UmerMaqsood10
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(Quote) Thank you very much shlee for this solution. I will try to do it using gatktool available in main galaxy platform Hope It would work. Thanks again for this help.
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(Quote) Dear Geraldine is there any way I can run Variant quality re-calibration using this combined file? or I need to split it first? The only thing I am good at is the gatktool available at galaxy server using available recaliberation option. ~~~~
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(Quote) Dear Geraldine Thanks for the answer kindly help me to to look on the header of my file if you can get any idea from here. fileformat=VCFv4.2 FILTER=<ID=LowQual,Description="Low quality"> FORMAT=<ID=AD,Number=.,Type=Int…