Heads up:
We’re moving the GATK website, docs and forum to a new platform. Read the full story and breakdown of key changes on this blog.
We’re moving the GATK website, docs and forum to a new platform. Read the full story and breakdown of key changes on this blog.
RaviKumarSindhu ✭
About
- Username
- RaviKumarSindhu
- Location
- Silver Spring, MD
- Joined
- Visits
- 7
- Last Active
- Roles
- Member
- Points
- 13
- Badges
- 3
- Location
- Silver Spring, MD
Reactions
Comments
-
Hi, I am working with Human sample WGS data (30X, PE reads, HiSeq platform) and facing problem at VQSR and variant annotation step. I ran following commands (modified here, path deleted) to get my files: * Converted each sample's bam file into gVCF…
-
"Gzipped fasta files will not work with the GATK, so please make sure to unzip them first."
-
Hi, I have a question about index of human reference genome using BWA. Is it ok to index the "zipped" fasta file of Human reference genome or one should ist unzip it and then index it using BWA ?. (1). bwa index -a bwtsw human_g1k_v37.fa…
-
Hi Geraldine, Thank you for the response. Now i am sure that i didn't have open access/permission of these FTP sites as mentioned by you and Ms. Sheila. Whenever i clicked these links or copy n paste them as new URL, the link eventually turn into '…
-
Hi Sheila, Thank you for the response. Ah...i am sure i am missing some information as i want to use my browser as FTP client, but i haven't change any settings therefore it is taking me to general broadinstitute FTP (ftp://ftp.broadinstitute.org/b…
-
Hello Geraldine, I am looking for bundle (having human reference genome hg19) but i didn't get it. The working link is taking me to "ftp://ftp.broadinstitute.org/" where there are number of directories e.g. Parent Directory distribution …