Luntary

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Luntary
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Genyo
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  • Thanks you so much Geraldine!! At this moment we are no really interesting in indel. But it's something that I have to consider with my PI.
  • I have changed both parameters (minDanglingBranchLength 4, maximum alternate alleles 3) and HaplotypeCaller stop in the same point. However I tried UnifiedGenotyper and It work and I detect my variants. Could I use UnifiedGenotyper instead of Haplot…
  • Ups sorry!! I have the following error " ERROR MESSAGE: An error occurred because you did not provide enough memory to run this program. You can use the -Xmx argument (before the -jar argument) to adjust the maximum heap size provided to Java. …
  • Yes I'm working with human samples. However I can't run HaplotypeCaller I have the Java problem that everybody comment in the forum U^^ I use the command -Xm32g but when HaplotypeCaller arrive to chr8 I receive the java error message and stop. Any i…
  • Thank yoy for the answer!! I'm going to try today. I have 10 sample so my ploidy is 20. It's right?