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We’re moving the GATK website, docs and forum to a new platform. Read the full story and breakdown of key changes on this blog.
We’re moving the GATK website, docs and forum to a new platform. Read the full story and breakdown of key changes on this blog.
Guillaume_D ✭
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- Guillaume_D
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- Lausanne, Switzerland
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Hi, My species is a bird, and the populations compared are quite close. So, regarding your answer, I'm now quite confident I can use the same known variants sites. Thanks a lot ! Guillaume
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Hi, My question is probably quite stupid but I just want to be sure: I already ran the GATK best practices pipeline on a set of individuals (non model species so "home made" set of known SNPs by bootstrapping for BQSR). If I want to add a…
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Hi Geraldine, Great, I will do that ! Thank you very much ! Guillaume
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Hi Sheila, Ok cool, I just wanted to be sure, thanks a lot ! Guillaume
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Hi, I read all the posts of this page and what to put in each read groups appear quite clear to me now (thanks!) but those discussions also rose some new questions to me. Let me first try to explain my quite complicated sequencing design. I have 9…
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Hi Sheila, Thank you for your answer. The goal, at least in a first time, is to check populations structure and genomic differentiation between populations. Guillaume