GooderPanQi

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GooderPanQi
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Chongqing, China
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  • Hi @ami and @Geraldine, thanks for this excellent workflow. Since we used 'Star' to align RNA raw read, we find some problems that the number of aligned bam ( 19291348, 'samtools flagstat' was used ) with 'STAR' is more than RNA sequencing raw read…
  • @ami, we run the step "variant calling", but there're something wrong: "Invalid command line: The parameter recoverDanglingHeads is deprecated.  This argument is deprecated since version 3.3". GATK version 3.3 don't supported the…
  • @ami, HaplotypeCaller supported for multiple samples calling on RNA-Seq?